updated 26 minutes ago by
GenoMax
142k
•
written 29 minutes ago by
dlera.lozano
•
0
0
votes
1
reply
17
views
0
votes
1
reply
24
views
795
votes
167
replies
143k
views
109 follow
updated 3 months ago by
Biostar
2.8k
•
written 7.4 years ago by
Istvan Albert
100k
0
votes
1
reply
41
views
updated 40 minutes ago by
jared.andrews07
★
16k
•
written 1 hour ago by
jen
▴
10
0
votes
1
reply
45
views
0
votes
3
replies
132
views
0
votes
1
reply
55
views
updated 2 hours ago by
LauferVA
4.2k
•
written 3 hours ago by
graeme.thorn
▴
100
0
votes
1
reply
62
views
0
votes
0
replies
42
views
4 hours ago by
ramiro.barrantes
•
0
4
votes
1
reply
138
views
6 hours ago by
J.
▴
40
0
votes
0
replies
50
views
6 hours ago by
jennyp0706
•
0
0
votes
3
replies
155
views
1
vote
1
reply
85
views
updated 2 hours ago by
Ram
43k
•
written 7 hours ago by
kilcdincer
▴
10
0
votes
0
replies
45
views
4
votes
4
replies
2.9k
views
0
votes
6
replies
247
views
4 hours ago by
ntsopoul
▴
60
0
votes
3
replies
149
views
0
votes
1
reply
118
views
0
votes
1
reply
110
views
0
votes
1
reply
91
views
1
vote
1
reply
136
views
0
votes
0
replies
58
views
0
votes
2
replies
125
views
0
votes
3
replies
295
views
updated 15 hours ago by
Wei-Chen Pan
•
0
•
written 9 weeks ago by
Matvii Mykhailichenko
•
0
0
votes
0
replies
81
views
2
votes
5
replies
209
views
updated 17 hours ago by
Philipp Bayer
8.5k
•
written 20 hours ago by
林明德
•
0
0
votes
4
replies
2.2k
views
0
votes
1
reply
101
views
20 hours ago by
Arton
•
0
2
votes
4
replies
153
views
0
votes
1
reply
122
views
0
votes
1
reply
123
views
updated 21 hours ago by
GenoMax
142k
•
written 1 day ago by
cedric.blais
•
0
0
votes
2
replies
391
views
0
votes
1
reply
111
views
1
vote
4
replies
376
views
1
vote
3
replies
336
views
1
vote
2
replies
225
views
10 hours ago by
Lukas
•
0
1
vote
2
replies
135
views
0
votes
0
replies
79
views
1
vote
2
replies
172
views
2
votes
0
replies
108
views
0
votes
1
reply
110
views
updated 22 hours ago by
Ram
43k
•
written 1 day ago by
kilcdincer
▴
10
0
votes
4
replies
206
views
0
votes
0
replies
79
views
0
votes
1
reply
127
views
1
vote
3
replies
215
views
0
votes
1
reply
135
views
0
votes
3
replies
156
views
3
votes
2
replies
245
views
12 hours ago by
analyst
▴
50
0
votes
0
replies
77
views
0
votes
1
reply
470
views
updated 1 day ago by
aw7
▴
280
•
written 24 days ago by
abhishekghadge
•
0
Recent Votes
Recent Locations •
All
United Kingdom, 1 minute ago
Turkey, 2 minutes ago
Oviedo, 2 minutes ago
United States, 2 minutes ago
United States, 3 minutes ago
United States, 4 minutes ago
Cambridge, MA, 7 minutes ago
Recent Awards •
All
Popular Question to
Sofia
•
0
Popular Question to
jen
▴
10
Popular Question to
nitinra
▴
50
Scholar to
Pierre Lindenbaum
161k
Popular Question to
bioinfo
▴
150
Popular Question to
waqaskhokhar999
▴
160
Recent Replies
Comment: Genome Visualization Tools
by
GenoMax
142k
@cmdcolin has a great list here: https://github.com/cmdcolin/awesome-genome-visualization
Answer: RSeQC : infer_experiment.py Error: Could not retrieve index file
by
Trivas
★
1.7k
You need to have indexed your bam/sam file using `samtools index`
Answer: Using ggplotly in R
by
jared.andrews07
★
16k
The simple answer is to plot it natively with plotly rather than use `ggplotly`. See [this stackoverflow answer](https://stackoverflow.com/…
Comment: Why does assigning genes with biomart give me different values than using a tran
by
GenoMax
142k
According to HUGO there is only one [**ZSCAN2 gene**][1] and it points to the first Ensembl gene ID (ENSG00000176371). Ensembl is annotatin…
Answer: RNAseq RNA content
by
noodle
▴
580
There are many tools for this. I recommend [gatk (picard) CollectRnaSeqMetrics][1] or alternatively [RSeQC][2]
and then run [multiqc][3…
Comment: Where to get the following bed file?
by
wyuan37
•
0
Hi, I emailed them and did get the bed file! Thank you so much.
Answer: Post-imputation QC for input into GWAS analyses
by
LauferVA
4.2k
1. Imputation algorithms will output log files indicating, among other things, accuracy of imputation. We can't comment on specifics as we …
Comment: Using Cutadapt to trim adapters from paired-end small RNA sequence data
by
GenoMax
142k
You can simply ignore read 2. It is not adding any information since your small RNA's are going to be small and were completely sequenced b…
Comment: Overlapping Ranges within Granges object
by
ntsopoul
▴
60
does this work with a single .bed file?
Comment: Finding variants within a subset of a BAM file
by
ramiro.barrantes
•
0
Actually, I found a solution in downloading "bam slices" from TCGA ([https://docs.gdc.cancer.gov/API/Users_Guide/BAM_Slicing/][1]) , which …
Comment: Overlapping Ranges within Granges object
by
ntsopoul
▴
60
![enter image description here][1]Here is some representative data and an image in igv of one gene. I have loaded the .bed file in igv. As …
Answer: RNAseq RNA content
by
ntsopoul
▴
60
I guess he/she means raw RNA. Roughly 2% of all RNA is mRNA the rest is rRNA. I think the first thing you need to figure out is with which …
Comment: Overlapping Ranges within Granges object
by
ATpoint
82k
I would probably collapse overlapping regions with `reduce` to create the second GRanges. Can you add some representative data? Using dput?
Traffic: 2595 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6